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Publications of Sætre, R. sorted by journal and type
Bioinformatics
| , , , , , , , and , AGRA: Analysis of Gene Ranking Algorithms (2011), in: Bioinformatics, 27:8(1185-1186) |
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| , , , and , Evaluating Contributions of Natural Language Parsers to Protein-Protein Interaction Extraction (2009), in: Bioinformatics, 25:3(394-400) |
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BMC Bioinformatics
| , , , , , , , , , , , , , , , , , , , , , , , , , , and , U-Compare bio-event meta-service: compatible BioNLP event extraction services (2011), in: BMC Bioinformatics, 12(481) |
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| , , , , , and , Medie and Info-pubmed: 2010 update (2010), in: BMC Bioinformatics, 11:Suppl 5(P7) |
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| , , , and , Investigating heterogeneous protein annotations toward cross-corpora utilization (2009), in: BMC Bioinformatics, 10(403) |
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Computational Intelligence
| , , , and , Bio-Molecular Event Extraction with Markov Logic (2011), in: Computational Intelligence, 27:4(558-582) |
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International Journal of Medical Informatics
| , , and , Protein-Protein Interaction Extraction by Leveraging Multiple Kernels and Parsers (2009), in: International Journal of Medical Informatics, 78:12(e39--e46) |
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Journal of Bioinformatics and Computational Biology
| , , and , Event Extraction with Complex Event Classification Using Rich Features (2010), in: Journal of Bioinformatics and Computational Biology, 8:1(131--146) |
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Journal of Bioinformatics and Computational Biology (JBCB)
| , , , , and , Improving the Inter-corpora Compatibility for Protein Annotations (2010), in: Journal of Bioinformatics and Computational Biology (JBCB), 8:5(901-916) |
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Transactions on Computational Biology and Bioinformatics (TCBB), BioCreative II.5 Special Issue
| , , , , and , Extracting Protein-Interactions from Text with the Unified AkaneRE Event Extraction System (2010), in: Transactions on Computational Biology and Bioinformatics (TCBB), BioCreative II.5 Special Issue, 7:3(442-453) |
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Publications of type Inproceedings
2011
| , , , , , , , and , Analysis of gene ranking algorithms with extraction of relevant biomedical concepts from Pubmed publications, in: Proceedings of the 1st IEEE International Conference on Computational Advances in Bio and medical Sciences (ICCABS), 2011 |
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2010
| , , and , Entity-Focused Sentence Simplification for Relation Extraction, in: Proceedings of the 23rd International Conference on Computational Linguistics (COLING 2010), pages 788-796, 2010 |
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2009
| , , and , A Rich Feature Vector for Protein-Protein Interaction Extraction from Multiple Corpora, in: Proceedings of EMNLP 2009, pages 121--130, 2009 |
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| , , , , and , AkaneRE Relation Extraction: Protein Interaction and Normalization in the BioCreAtIvE II.5 Challenge, in: BioCreative II.5 Workshop 2009 special session | Digital Annotations, pages 33, CNIO, 2009 |
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| , , , , , , , and , Community Platform for Pathway Model Building, in: 10th International Conference on Systems Biology, pages 139-140, Stanford University, 2009 |
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| , , , , and , Demystifying protein annotations: toward increasing the compatibility of different corpora, in: Proceedings of the 3rd International Symposium on Languages in Biology and Medicine (LBM 2009), pages 103--108, 2009 |
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| , , and , From Protein-Protein Interaction to Molecular Event Extraction, in: Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, pages 103--106, 2009 |
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2008
| , , , , , , , , and , Connecting Text Mining and Pathways using the PathText Resource, in: Proceedings of the Sixth International Conference on Language Resources and Evaluation (LREC 2008), pages 1736-1740, European Language Resources Association (ELRA), 2008 |
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| , , , , , , , and , Filling the gaps between tools and users: a tool comparator, using protein-protein interaction as an example., in: Proceedings of the Pacific Symposium on Biocomputing 2008 (PSB 2008), pages 616--627, 2008 |
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| , , , , , , , , and , PathText: Text Mining Tools Integrated with Biological Pathway, in: Genomes to Systems Conference 2008 Handbook, pages 65, The Consortium for Post-Genome Science, 2008 |
| , , , , , , , and , Sharable type system design for tool inter-operability and combinatorial comparison, in: Proceedings of the First International Conference on Global Interoperability for Language Resources (ICGL), pages 122--129, 2008 |
| , and , Syntactic features for protein-protein interaction extraction, in: Short Paper Proceedings of the 2nd International Symposium on Languages in Biology and Medicine (LBM 2007), pages 6.1-6.14, CEUR Workshop Proceedings (CEUR-WS.org), 2008 |
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| , , , and , Task-Oriented Evaluation of Syntactic Parsers and Their Representations, in: Proceedings of ACL-08:HLT, pages 46-54, 2008 |
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| , , , , , , , and , Towards Data And Goal Oriented Analysis: Tool Inter-Operability And Combinatorial Comparison, in: Proceedings of the 3rd International Joint Conference on Natural Language Processing (IJCNLP-2008), pages 859-864, 2008 |
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| , , and , Why Biomedical Relation Extraction Results are Incomparable and What to do about it, in: Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008), pages 149--152, 2008 |
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