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Publications of Pyysalo, S. sorted by title
A
| , , and , A Comparative Study of Syntactic Parsers for Event Extraction, in: Proceedings of BioNLP 2010, ACL., páginas 37--45, 2010 |
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| , , , , , and , A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text (2013), in: Bioinformatics, 29:13(i44-i52) |
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| , , and , A re-evaluation of biomedical named entity-term relations (2010), in: Journal of Bioinformatics and Computational Biology (JBCB), 8:5(917--928) |
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| , , and , Almost Total Recall: Semantic Category Disambiguation Using Large Lexical Resources and Approximate String Matching (2011), in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011) |
| , and , An Analysis of Gene/Protein Associations at PubMed Scale, in: Proceedings of the fourth International Symposium for Semantic Mining in Biomedicine (SMBM 2010), 2010 |
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| and , Anatomical Entity Mention Recognition at Literature Scale (2014), in: Bioinformatics, 30:6(868-875) |
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| , and , Anatomical Entity Recognition with Open Biomedical Ontologies, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011 |
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B
| , , and , BioCause: Annotating and Analysing Causality in the Biomedical Domain (2013), in: BMC Bioinformatics, 14:1(2) |
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| , , , , and , BioLexicon: A Lexical Resource for the Biology Domain, in: Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008), Turku, Finland, páginas 109--116, Turku Centre for Computer Science (TUCS), 2008 |
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| , , , , and , BioNLP Shared Task 2011: Supporting Resources, in: Proceedings of the BioNLP Shared Task 2011 Workshop, páginas 112--120, Association for Computational Linguistics, 2011 |
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B
| , , , , and , brat: a Web-based Tool for NLP-Assisted Text Annotation, in: Proceedings of the Demonstrations at the 13th Conference of the European Chapter of the Association for Computational Linguistics, Avignon, France, páginas 102-107, Association for Computational Linguistics, 2012 |
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B
| , , , and , Bridging the Gap Between Scope-based and Event-based Negation/Speculation Annotations: A Bridge Not Too Far, in: Proceedings of ExProM 2012, páginas 47-56, 2012 |
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C
| , , , and , Complex event extraction at PubMed scale (2010), in: Bioinformatics, 26:12(i382-i390) |
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D
| , , , , and , Demystifying protein annotations: toward increasing the compatibility of different corpora, in: Proceedings of the 3rd International Symposium on Languages in Biology and Medicine (LBM 2009), páginas 103--108, 2009 |
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| , , , and , Distributional Semantics Resources for Biomedical Text Processing, in: Proceedings of LBM 2013, páginas 39-44, 2013 |
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E
| , , and , Evaluating Dependency Representation for Event Extraction, in: Proceedings of the 23rd International Conference on Computational Linguistics (COLING 2010), páginas 779-787, 2010 |
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| , , , , and , Event extraction across multiple levels of biological organization (2012), in: Bioinformatics, 28:18(i575-i581) |
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| , , and , Event Extraction for DNA Methylation, in: Proceedings of the fourth International Symposium for Semantic Mining in Biomedicine (SMBM 2010), 2010 |
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| , , , and , Event Extraction for Post-Translational Modifications, in: Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, páginas 19--27, Association for Computational Linguistics, 2010 |
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| , , and , Event extraction for systems biology by text mining the literature (2010), in: Trends in Biotechnology, 28:7(381-390) |
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| , , , and , Extracting Bio-Molecular Events From Literature—The BioNLP’09 Shared Task (2011), in: Computational Intelligence, 27:4(513-540) |
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F
| , and , From Pathways to Biomolecular Events: Opportunities and Challenges, in: Proceedings of the BioNLP 2011 Workshop, páginas 105--113, Association for Computational Linguistics, 2011 |
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G
| , , and , Generalising semantic category disambiguation with large lexical resources for fun and profit (2014), in: Journal of Biomedical Semantics, 5(26) |
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I
| , , , , and , Improving the Inter-corpora Compatibility for Protein Annotations (2010), in: Journal of Bioinformatics and Computational Biology (JBCB), 8:5(901-916) |
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| , , , and , Incorporating GENETAG-style annotation to GENIA corpus, in: Proceedings of BioNLP 2009 Workshop, páginas 106--107, 2009 |
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