Pyysalo, S. - NaCTeM Publications

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Voornamen:	S.
Achternamen:	Pyysalo

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Pyysalo, S. en Ananiadou, S., Anatomical Entity Mention Recognition at Literature Scale (2014), in: Bioinformatics, 30:6(868-875)

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Miwa, M., Ohta, T., Rak, R., Rowley, A., Kell, D. B., Pyysalo, S. en Ananiadou, S., A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text (2013), in: Bioinformatics, 29:13(i44-i52)

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Pyysalo, S., Ohta, T., Miwa, M., Cho, H. -C., Tsujii, J. en Ananiadou, S., Event extraction across multiple levels of biological organization (2012), in: Bioinformatics, 28:18(i575-i581)

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BjÃ¶rne, J., Ginter, F., Pyysalo, S., Tsujii, J. en Salakoski, T., Complex event extraction at PubMed scale (2010), in: Bioinformatics, 26:12(i382-i390)

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Pyysalo, S., Ohta, T., Rak, R., Rowley, A., Chun, H.-W., Jung, S. -J., Choi, S. -P., Tsujii, J. en Ananiadou, S., Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013 (2015), in: BMC BioInformatics, 16(Suppl 10):Suppl 10(S2)

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MihÄƒilÄƒ, C., Ohta, T., Pyysalo, S. en Ananiadou, S., BioCause: Annotating and Analysing Causality in the Biomedical Domain (2013), in: BMC Bioinformatics, 14:1(2)

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Miwa, M., Pyysalo, S., Ohta, T. en Ananiadou, S., Wide coverage biomedical event extraction using multiple partially overlapping corpora (2013), in: BMC Bioinformatics, 14:175

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Pyysalo, S., Ohta, T., Rak, R., Sullivan, D., Mao, C., Wang, C., Sobral, B., Tsujii, J. en Ananiadou, S., Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011 (2012), in: BMC Bioinformatics, 13:Suppl. 11(S2)

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Kano, Y., BjÃ¶rne, J., Ginter, F., Salakoski, T., Buyko, E., Hahn, U., Cohen, K. B., Verspoor, K., Roeder, C., Hunter, L., Kilicoglu, H., Bergler, S., Van Landeghem, S., Van Parys, T., Van de Peer, Y., Miwa, M., Ananiadou, S., Neves, M., Pascual-Montano, A., Ozgur, A., Radev, D. R., Riedel, S., SÃ¦tre, R., Chun, H.-W., Kim, J.-D., Pyysalo, S., Ohta, T. en Tsujii, J., U-Compare bio-event meta-service: compatible BioNLP event extraction services (2011), in: BMC Bioinformatics, 12(481)

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Ohta, T., Matsuzaki, T., Okazaki, N., Miwa, M., SÃ¦tre, R., Pyysalo, S. en Tsujii, J., Medie and Info-pubmed: 2010 update (2010), in: BMC Bioinformatics, 11:Suppl 5(P7)

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Wang, Y., Kim, J.-D., SÃ¦tre, R., Pyysalo, S. en Tsujii, J., Investigating heterogeneous protein annotations toward cross-corpora utilization (2009), in: BMC Bioinformatics, 10(403)

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Kim, J.-D., Ohta, T., Pyysalo, S., Kano, Y. en Tsujii, J., Extracting Bio-Molecular Events From Literatureâ€”The BioNLPâ€™09 Shared Task (2011), in: Computational Intelligence, 27:4(513-540)

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Ohta, T., Pyysalo, S., Kim, J.-D. en Tsujii, J., A re-evaluation of biomedical named entity-term relations (2010), in: Journal of Bioinformatics and Computational Biology (JBCB), 8:5(917--928)

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Wang, Y., Kim, J.-D., SÃ¦tre, R., Pyysalo, S., Ohta, T. en Tsujii, J., Improving the Inter-corpora Compatibility for Protein Annotations (2010), in: Journal of Bioinformatics and Computational Biology (JBCB), 8:5(901-916)

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Stenetorp, P., Pyysalo, S., Ananiadou, S. en Tsujii, J., Generalising semantic category disambiguation with large lexical resources for fun and profit (2014), in: Journal of Biomedical Semantics, 5(26)

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Van Landeghem, S., BjÃ¶rne, J., Wei, C-. H, Hakala, K., Pyysalo, S., Ananiadou, S., Kao, H. -Y., Lu, Z., Salakoski, T., Van de Peer, Y. en Ginter, F., Large-scale event extraction from literature with multi-level gene normalization (2013), in: PLOS ONE, 8:4(e55814)

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Ananiadou, S., Sullivan, D., Black, W.J., Levow, G., Gillespie, J., Mao, C., Pyysalo, S., Kolluru, B., Tsujii, J. en Sobral, B., Named Entity Recognition for Bacterial Type IV Secretion Systems (2011), in: PLoS ONE, 6:3(e14780)

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Stenetorp, P., Pyysalo, S., Ananiadou, S. en Tsujii, J., Almost Total Recall: Semantic Category Disambiguation Using Large Lexical Resources and Approximate String Matching (2011), in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011)

Ananiadou, S., Pyysalo, S., Tsujii, J. en Kell, D. B., Event extraction for systems biology by text mining the literature (2010), in: Trends in Biotechnology, 28:7(381-390)

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Pyysalo, S., Ginter, F., Moen, H., Salakoski, T. en Ananiadou, S., Distributional Semantics Resources for Biomedical Text Processing, in: Proceedings of LBM 2013, pagina's 39-44, 2013

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NÃ©dellec, C., Bossy, R., Kim, J.-D., Kim, J-J., Ohta, T., Pyysalo, S. en Zweigenbaum, P., Overview of BioNLP Shared Task 2013, in: Proceedings of the BioNLP Shared Task 2013 Workshop, pagina's 1--7, Association for Computational Linguistics, 2013

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Pyysalo, S., Ohta, T. en Ananiadou, S., Overview of the Cancer Genetics (CG) task of BioNLP Shared Task 2013, in: Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, Bulgaria, pagina's 58-66, Association for Computational Linguistics, 2013

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Ohta, T., Pyysalo, S., Rak, R., Rowley, A., Chun, H.-W., Jung, S. -J., Choi, S. -P. en Ananiadou, S., Overview of the Pathway Curation (PC) task of BioNLP Shared Task 2013, in: Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, Bulgaria, pagina's 67-75, Association for Computational Linguistics, 2013

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Stenetorp, P., Pyysalo, S., TopiÄ‡, G., Ohta, T., Ananiadou, S. en Tsujii, J., brat: a Web-based Tool for NLP-Assisted Text Annotation, in: Proceedings of the Demonstrations at the 13th Conference of the European Chapter of the Association for Computational Linguistics, Avignon, France, pagina's 102-107, Association for Computational Linguistics, 2012

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Stenetorp, P., Pyysalo, S., Ohta, T., Ananiadou, S. en Tsujii, J., Bridging the Gap Between Scope-based and Event-based Negation/Speculation Annotations: A Bridge Not Too Far, in: Proceedings of ExProM 2012, pagina's 47-56, 2012

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