Rak, R. - NaCTeM Publications - Aigaion 2.0

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Miwa, M., Ohta, T., Rak, R., Rowley, A., Kell, D. B., Pyysalo, S. und Ananiadou, S., A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text (2013), in: Bioinformatics, 29:13(i44-i52)

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Pyysalo, S., Ohta, T., Rak, R., Rowley, A., Chun, H.-W., Jung, S. -J., Choi, S. -P., Tsujii, J. und Ananiadou, S., Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013 (2015), in: BMC BioInformatics, 16(Suppl 10):Suppl 10(S2)

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Pyysalo, S., Ohta, T., Rak, R., Sullivan, D., Mao, C., Wang, C., Sobral, B., Tsujii, J. und Ananiadou, S., Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011 (2012), in: BMC Bioinformatics, 13:Suppl. 11(S2)

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Wang, X., Rak, R., Restificar, A., Nobata, C., Rupp, C. J., Batista-Navarro, R., Nawaz, R. und Ananiadou, S., Detecting Experimental Techniques and Selecting Relevant Documents for Protein-Protein Interactions from Biomedical Literature (2011), in: BMC Bioinformatics, 12:Suppl 8(S11)

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Krallinger, M., Vazquez, M., Leitner, F., Salgado, D., Chatr-aryamontri, A., Winter, A., Perfetto, L., Briganti, L., Licata, L., Iannuccelli, M., Castagnoli, L., Cesareni, G., Tyers, M., Schneider, G., Rinaldi, F., Leaman, R., Gonzalez, G., Matos, S., Kim, S., Wilbur, W., Rocha, L., Shatkay, H., Tendulkar, A., Agarwal, S., Liu, F., Wang, X., Rak, R., Noto, K., Elkan, C. und Lu, Z., The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text (2011), in: BMC Bioinformatics, 12:Suppl 8(S3)

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Comeau, Donald C., Batista-Navarro, R., Dai, Hong-Jie, Islamaj DoÄŸan, Rezarta, Jimeno Yepes, Antonio, Khare, Ritu, Lu, Zhiyong, Marques, Hernani, Mattingly, Carolyn J., Neves, M., Peng, Yifan, Rak, R., Rinaldi, F., Tsai, Richard Tzong-Han, Verspoor, K., Wiegers, Thomas C., Wu, Cathy H. und Wilbur, W., BioC interoperability track overview (2014), in: Database: The Journal of Biological Databases and Curation, 2014

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Rak, R., Batista-Navarro, R., Carter, J., Rowley, A. und Ananiadou, S., Processing Biological Literature with Customisable Web Services Supporting Interoperable Formats (2014), in: Database: The Journal of Biological Databases and Curation

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Rak, R., Batista-Navarro, R., Rowley, A., Carter, J. und Ananiadou, S., Text Mining-assisted Biocuration Workflows in Argo (2014), in: Database: The Journal of Biological Databases and Curation

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Rak, R., Rowley, A., Black, W.J. und Ananiadou, S., Argo: an integrative, interactive, text mining-based workbench supporting curation (2012), in: Database: The Journal of Biological Databases and Curation, 2012

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Batista-Navarro, R., Rak, R. und Ananiadou, S., Optimising chemical named entity recognition with pre-processing analytics, knowledge-rich features and heuristics (2015), in: Journal of Cheminformatics, 7:Suppl 1(S6)

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MihÄƒilÄƒ, C., Batista-Navarro, R., Alnazzawi, N., Kontonatsios, G., Korkontzelos, I., Rak, R., Thompson, P. und Ananiadou, S., Mining the biomedical literature, in: Healthcare Data Analytics, Seiten 251-308, CRC Press, 2015

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Batista-Navarro, R., Kontonatsios, G., MihÄƒilÄƒ, C., Thompson, P., Rak, R., Nawaz, R., Korkontzelos, I. und Ananiadou, S., Facilitating the Analysis of Discourse Phenomena in an Interoperable NLP Platform, in: Computational Linguistics and Intelligent Text Processing, Seiten 559-571, Springer Berlin Heidelberg, 2013

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Rak, R., Rowley, A., Carter, J., Batista-Navarro, R. und Ananiadou, S., Interoperability and Customisation of Annotation Schemata in Argo, in: Proceedings of the Ninth International Conference on Language Resources and Evaluation (LREC'14), Reykjavik, Iceland, Seiten 3837-3842, European Language Resources Association (ELRA), 2014

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Batista-Navarro, R., Rak, R. und Ananiadou, S., Chemistry-specific Features and Heuristics for Developing a CRF-based Chemical Named Entity Recogniser, in: Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, Bethesda, Maryland, USA, Seiten 55-59, 2013

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Rak, R., Batista-Navarro, R., Rowley, A., Carter, J. und Ananiadou, S., Customisable Curation Workflows in Argo, in: Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, Bethesda, Maryland, USA, Seiten 270-278, 2013

Rak, R., Rowley, A., Carter, J. und Ananiadou, S., Development and Analysis of NLP Pipelines in Argo, in: Proceedings of the 51st Annual Meeting of the Association for Computational Linguistics: System Demonstrations, Association for Computational Linguistics, Sofia, Bulgaria, Seiten 115-120, 2013

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Rak, R. und Ananiadou, S., Making UIMA Truly Interoperable with SPARQL, in: Proceedings of the 7th Linguistic Annotation Workshop and Interoperability with Discourse, Sofia, Bulgaria, Seiten 88-97, 2013

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Batista-Navarro, R., Rak, R. und Ananiadou, S., NaCTeM CTD Web Services, in: Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, Bethesda, Maryland, USA, Seiten 85-89, 2013

Rak, R., Batista-Navarro, R., Rowley, A., Miwa, M., Carter, J. und Ananiadou, S., NaCTeMâ€™s BioC Modules and Resources for BioCreative IV, in: Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, Bethesda, Maryland, USA, Seiten 61-67, 2013

Ohta, T., Pyysalo, S., Rak, R., Rowley, A., Chun, H.-W., Jung, S. -J., Choi, S. -P. und Ananiadou, S., Overview of the Pathway Curation (PC) task of BioNLP Shared Task 2013, in: Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, Bulgaria, Seiten 67-75, Association for Computational Linguistics, 2013

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Rak, R., Kolluru, B. und Ananiadou, S., Building trainable taggers in a web-based, UIMA-supported NLP workbench, in: Proceedings of the 50th Annual Meeting of the Association for Computational Linguistics (ACL 2012), Seiten 121-126, 2012

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Rak, R., Rowley, A. und Ananiadou, S., Collaborative Development and Evaluation of Text-processing Workflows in a UIMA-supported Web-based Workbench, in: Proceedings of the Eighth International Conference on Language Resources and Evaluation (LREC 2012), Seiten 2971-2976, 2012

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Pyysalo, S., Ohta, T., Rak, R., Sullivan, D., Mao, C., Wang, C., Sobral, B., Tsujii, J. und Ananiadou, S., Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011, in: Proceedings of the BioNLP Shared Task 2011 Workshop, Seiten 26--35, Association for Computational Linguistics, 2011

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