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Publications of Tsujii, J. sorted by recency
| , , and , Proximity-based Frameworks for Generating Embeddings from Multi-Output Data (2012), in: IEEE Transactions on Pattern Analysis and Machine Intelligence |
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| , , , , , , , , , , , , , , , , , , , , , , , , , , and , U-Compare bio-event meta-service: compatible BioNLP event extraction services (2011), in: BMC Bioinformatics, 12(481) |
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| , , , and , Extracting Bio-Molecular Events From Literature—The BioNLP’09 Shared Task (2011), in: Computational Intelligence, 27:4(513-540) |
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| , , and , Almost Total Recall: Semantic Category Disambiguation Using Large Lexical Resources and Approximate String Matching (2011), in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011) |
| , , and , Pathway Curation Support as an Information Extraction Task, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011 |
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| , , , , , and , Automatic Extraction of Angiogenesis Bio-Process from Text (2011), in: Bioinformatics, 27:19(2730-2737) |
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| , , and , Why Biomedical Relation Extraction Results are Incomparable and What to do about it, in: Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008), pages 149--152, 2008 |
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| , , , , and , Demystifying protein annotations: toward increasing the compatibility of different corpora, in: Proceedings of the 3rd International Symposium on Languages in Biology and Medicine (LBM 2009), pages 103--108, 2009 |
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| , and , An Analysis of Gene/Protein Associations at PubMed Scale, in: Proceedings of the fourth International Symposium for Semantic Mining in Biomedicine (SMBM 2010), 2010 |
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| , , and , Event Extraction for DNA Methylation, in: Proceedings of the fourth International Symposium for Semantic Mining in Biomedicine (SMBM 2010), 2010 |
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| , , , and , Event Extraction for Post-Translational Modifications, in: Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, pages 19--27, Association for Computational Linguistics, 2010 |
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| , , and , A re-evaluation of biomedical named entity-term relations (2010), in: Journal of Bioinformatics and Computational Biology (JBCB), 8:5(917--928) |
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| , and , Overview of BioNLP 2011 Protein Coreference Shared Task, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pages 74--82, Association for Computational Linguistics, 2011 |
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| , and , Learning the Optimal Use of Dependency-parsing Information for Finding Translations with Comparable Corpora, in: Proceedings of the 4th Workshop on Building and Using Comparable Corpora: Comparable Corpora and the Web, pages 10--18, Association for Computational Linguistics, 2011 |
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| , , , and , A Collaborative Annotation between Human Annotators and a Statistical Parser, in: Proceedings of the 5th Linguistic Annotation Workshop, pages 56--64, Association for Computational Linguistics, 2011 |
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| , , and , Automatic Acquisition of Huge Training Data for Bio-Medical Named Entity Recognition, in: Proceedings of the BioNLP 2011 Workshop, pages 65--73, Association for Computational Linguistics, 2011 |
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| , , , , , , , and , Design and Implementation of GXP Make -- A Workflow System Based on Make, in: Proceedings of the 2010 IEEE Sixth International Conference on e-Science, pages 214--221, IEEE Computer Society, 2010 |
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| , and , Effective use of dependency structure for bilingual lexicon creation, in: Proceedings of the 12th international conference on Computational linguistics and intelligent text processing (CICLing'11) - Volume Part II, Tokyo, Japan, pages 80--92, Springer-Verlag, 2011 |
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| , , , , and , BioNLP Shared Task 2011: Supporting Resources, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pages 112--120, Association for Computational Linguistics, 2011 |
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| , and , Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011, in: Proceedings of theBioNLP Shared Task 2011 Workshop, pages 83--88, Association for Computational Linguistics, 2011 |
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| , , , , , , , and , Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pages 26--35, Association for Computational Linguistics, 2011 |
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| , and , Overview of the Epigenetics and Post-translational Modifications (EPI) task of BioNLP Shared Task 2011, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pages 16--25, Association for Computational Linguistics, 2011 |
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| , , , , and , Overview of BioNLP Shared Task 2011, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pages 1--6, Association for Computational Linguistics, 2011 |
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| , , and , Towards Exhaustive Event Extraction for Protein Modifications, in: Proceedings of the BioNLP 2011 Workshop, pages 114--123, Association for Computational Linguistics, 2011 |
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| , and , From Pathways to Biomolecular Events: Opportunities and Challenges, in: Proceedings of the BioNLP 2011 Workshop, pages 105--113, Association for Computational Linguistics, 2011 |
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