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Pyysalo, S.
First name(s): S.
Last name(s): Pyysalo

Keywords:


Publications of Pyysalo, S. sorted by journal and type
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Publications of type Inproceedings


2012

Ohta, T., Pyysalo, S., Tsujii, J. and Ananiadou, S., Open-domain Anatomical Entity Mention Detection, in: Proceedings of the ACL Workshop on Detecting Stucture in Scholarly Discourse (DSSD), pages 27-36, 2012
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2011

Pyysalo, S., Ohta, T. and Ananiadou, S., Anatomical Entity Recognition with Open Biomedical Ontologies, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011
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Stenetorp, P., Topić, G., Pyysalo, S., Ohta, T., Kim, J.-D. and Tsujii, J., BioNLP Shared Task 2011: Supporting Resources, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pages 112--120, Association for Computational Linguistics, 2011
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Ohta, T., Pyysalo, S. and Tsujii, J., From Pathways to Biomolecular Events: Opportunities and Challenges, in: Proceedings of the BioNLP 2011 Workshop, pages 105--113, Association for Computational Linguistics, 2011
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Kim, J.-D., Pyysalo, S., Ohta, T., Bossy, R., Nguyen, N. T. H. and Tsujii, J., Overview of BioNLP Shared Task 2011, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pages 1--6, Association for Computational Linguistics, 2011
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Pyysalo, S., Ohta, T. and Tsujii, J., Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011, in: Proceedings of theBioNLP Shared Task 2011 Workshop, pages 83--88, Association for Computational Linguistics, 2011
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Ohta, T., Pyysalo, S. and Tsujii, J., Overview of the Epigenetics and Post-translational Modifications (EPI) task of BioNLP Shared Task 2011, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pages 16--25, Association for Computational Linguistics, 2011
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Pyysalo, S., Ohta, T., Rak, R., Sullivan, D., Mao, C., Wang, C., Sobral, B., Tsujii, J. and Ananiadou, S., Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pages 26--35, Association for Computational Linguistics, 2011
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Ohta, T., Pyysalo, S., Ananiadou, S. and Tsujii, J., Pathway Curation Support as an Information Extraction Task, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011
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Stenetorp, P., Pyysalo, S. and Tsujii, J., SimSem: Fast Approximate String Matching in Relation to Semantic Category Disambiguation, in: Proceedings of the BioNLP 2011 Workshop, pages 136-145, Association for Computational Linguistics, 2011
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Pyysalo, S., Ohta, T., Miwa, M. and Tsujii, J., Towards Exhaustive Event Extraction for Protein Modifications, in: Proceedings of the BioNLP 2011 Workshop, pages 114--123, Association for Computational Linguistics, 2011
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2010

Miwa, M., Pyysalo, S., Hara, T. and Tsujii, J., A Comparative Study of Syntactic Parsers for Event Extraction, in: Proceedings of BioNLP 2010, ACL., pages 37--45, 2010
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Pyysalo, S., Ohta, T. and Tsujii, J., An Analysis of Gene/Protein Associations at PubMed Scale, in: Proceedings of the fourth International Symposium for Semantic Mining in Biomedicine (SMBM 2010), 2010
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Miwa, M., Pyysalo, S., Hara, T. and Tsujii, J., Evaluating Dependency Representation for Event Extraction, in: Proceedings of the 23rd International Conference on Computational Linguistics (COLING 2010), pages 779-787, 2010
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Ohta, T., Pyysalo, S., Miwa, M. and Tsujii, J., Event Extraction for DNA Methylation, in: Proceedings of the fourth International Symposium for Semantic Mining in Biomedicine (SMBM 2010), 2010
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Ohta, T., Pyysalo, S., Miwa, M., Kim, J.-D. and Tsujii, J., Event Extraction for Post-Translational Modifications, in: Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, pages 19--27, Association for Computational Linguistics, 2010
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2009

Wang, Y., Kim, J.-D., Sætre, R., Pyysalo, S., Ohta, T. and Tsujii, J., Demystifying protein annotations: toward increasing the compatibility of different corpora, in: Proceedings of the 3rd International Symposium on Languages in Biology and Medicine (LBM 2009), pages 103--108, 2009
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Ohta, T., Kim, J.-D., Pyysalo, S., Wang, Y. and Tsujii, J., Incorporating GENETAG-style annotation to GENIA corpus, in: Proceedings of BioNLP 2009 Workshop, pages 106--107, 2009
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Kim, J.-D., Ohta, T., Pyysalo, S., Kano, Y. and Tsujii, J., Overview of BioNLP'09 Shared Task on Event Extraction, in: Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, pages 1--9, 2009
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2008

Sasaki, Y., Montemagni, S., Pezik, P., Rebholz-Schuhmann, D., McNaught, J. and Ananiadou, S., BioLexicon: A Lexical Resource for the Biology Domain, in: Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008), Turku, Finland, pages 109--116, Turku Centre for Computer Science (TUCS), 2008
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Pyysalo, S., Sætre, R., Tsujii, J. and Salakoski, T., Why Biomedical Relation Extraction Results are Incomparable and What to do about it, in: Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008), pages 149--152, 2008
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