Ohta, T. - NaCTeM Publications

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Vorname(n):	T.
Nachname(n):	Ohta

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Pyysalo, S., Ohta, T., Rak, R., Rowley, A., Chun, H.-W., Jung, S. -J., Choi, S. -P., Tsujii, J. und Ananiadou, S., Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013 (2015), in: BMC BioInformatics, 16(Suppl 10):Suppl 10(S2)

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NÃ©dellec, C., Bossy, R., Kim, J.-D., Kim, J-J., Ohta, T., Pyysalo, S. und Zweigenbaum, P., Overview of BioNLP Shared Task 2013, in: Proceedings of the BioNLP Shared Task 2013 Workshop, Seiten 1--7, Association for Computational Linguistics, 2013

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Ohta, T., Pyysalo, S., Rak, R., Rowley, A., Chun, H.-W., Jung, S. -J., Choi, S. -P. und Ananiadou, S., Overview of the Pathway Curation (PC) task of BioNLP Shared Task 2013, in: Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, Bulgaria, Seiten 67-75, Association for Computational Linguistics, 2013

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Pyysalo, S., Ohta, T. und Ananiadou, S., Overview of the Cancer Genetics (CG) task of BioNLP Shared Task 2013, in: Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, Bulgaria, Seiten 58-66, Association for Computational Linguistics, 2013

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Miwa, M., Ohta, T., Rak, R., Rowley, A., Kell, D. B., Pyysalo, S. und Ananiadou, S., A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text (2013), in: Bioinformatics, 29:13(i44-i52)

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Miwa, M., Pyysalo, S., Ohta, T. und Ananiadou, S., Wide coverage biomedical event extraction using multiple partially overlapping corpora (2013), in: BMC Bioinformatics, 14:175

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MihÄƒilÄƒ, C., Ohta, T., Pyysalo, S. und Ananiadou, S., BioCause: Annotating and Analysing Causality in the Biomedical Domain (2013), in: BMC Bioinformatics, 14:1(2)

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Ananiadou, S., Ohta, T. und Rutter, M., Text Mining supporting Search for Knowledge Discovery in Diabetes (2012), in: Current Cardiovascular Risk Reports

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Pyysalo, S., Ohta, T., Miwa, M., Cho, H. -C., Tsujii, J. und Ananiadou, S., Event extraction across multiple levels of biological organization (2012), in: Bioinformatics, 28:18(i575-i581)

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Stenetorp, P., Pyysalo, S., Ohta, T., Ananiadou, S. und Tsujii, J., Bridging the Gap Between Scope-based and Event-based Negation/Speculation Annotations: A Bridge Not Too Far, in: Proceedings of ExProM 2012, Seiten 47-56, 2012

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Ohta, T., Pyysalo, S., Tsujii, J. und Ananiadou, S., Open-domain Anatomical Entity Mention Detection, in: Proceedings of the ACL Workshop on Detecting Stucture in Scholarly Discourse (DSSD), Seiten 27-36, 2012

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Pyysalo, S., Stenetorp, P., Ohta, T., Kim, J.-D. und Ananiadou, S., New Resources and Perspectives for Biomedical Event Extraction, in: Proceedings of BioNLP 2012, Seiten 100-108, 2012

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BjÃ¶rne, J., Van Landeghem, S., Pyysalo, S., Ohta, T., Ginter, F., Van de Peer, Y., Ananiadou, S. und Salakoski, T., PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations, in: Proceedings of BioNLP 2012, Seiten 82-90, 2012

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Pyysalo, S., Ohta, T., Rak, R., Sullivan, D., Mao, C., Wang, C., Sobral, B., Tsujii, J. und Ananiadou, S., Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011 (2012), in: BMC Bioinformatics, 13:Suppl. 11(S2)

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Stenetorp, P., Pyysalo, S., TopiÄ‡, G., Ohta, T., Ananiadou, S. und Tsujii, J., brat: a Web-based Tool for NLP-Assisted Text Annotation, in: Proceedings of the Demonstrations at the 13th Conference of the European Chapter of the Association for Computational Linguistics, Avignon, France, Seiten 102-107, Association for Computational Linguistics, 2012

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Kano, Y., BjÃ¶rne, J., Ginter, F., Salakoski, T., Buyko, E., Hahn, U., Cohen, K. B., Verspoor, K., Roeder, C., Hunter, L., Kilicoglu, H., Bergler, S., Van Landeghem, S., Van Parys, T., Van de Peer, Y., Miwa, M., Ananiadou, S., Neves, M., Pascual-Montano, A., Ozgur, A., Radev, D. R., Riedel, S., SÃ¦tre, R., Chun, H.-W., Kim, J.-D., Pyysalo, S., Ohta, T. und Tsujii, J., U-Compare bio-event meta-service: compatible BioNLP event extraction services (2011), in: BMC Bioinformatics, 12(481)

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Kim, J.-D., Ohta, T., Pyysalo, S., Kano, Y. und Tsujii, J., Extracting Bio-Molecular Events From Literatureâ€”The BioNLPâ€™09 Shared Task (2011), in: Computational Intelligence, 27:4(513-540)

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Ohta, T., Pyysalo, S., Ananiadou, S. und Tsujii, J., Pathway Curation Support as an Information Extraction Task, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011

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Pyysalo, S., Ohta, T. und Ananiadou, S., Anatomical Entity Recognition with Open Biomedical Ontologies, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011

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Wang, Y., Kim, J.-D., SÃ¦tre, R., Pyysalo, S., Ohta, T. und Tsujii, J., Demystifying protein annotations: toward increasing the compatibility of different corpora, in: Proceedings of the 3rd International Symposium on Languages in Biology and Medicine (LBM 2009), Seiten 103--108, 2009

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Pyysalo, S., Ohta, T. und Tsujii, J., An Analysis of Gene/Protein Associations at PubMed Scale, in: Proceedings of the fourth International Symposium for Semantic Mining in Biomedicine (SMBM 2010), 2010

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Ohta, T., Pyysalo, S., Miwa, M. und Tsujii, J., Event Extraction for DNA Methylation, in: Proceedings of the fourth International Symposium for Semantic Mining in Biomedicine (SMBM 2010), 2010

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Ohta, T., Pyysalo, S., Miwa, M., Kim, J.-D. und Tsujii, J., Event Extraction for Post-Translational Modifications, in: Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, Seiten 19--27, Association for Computational Linguistics, 2010

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Ohta, T., Pyysalo, S., Kim, J.-D. und Tsujii, J., A re-evaluation of biomedical named entity-term relations (2010), in: Journal of Bioinformatics and Computational Biology (JBCB), 8:5(917--928)

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Stenetorp, P., TopiÄ‡, G., Pyysalo, S., Ohta, T., Kim, J.-D. und Tsujii, J., BioNLP Shared Task 2011: Supporting Resources, in: Proceedings of the BioNLP Shared Task 2011 Workshop, Seiten 112--120, Association for Computational Linguistics, 2011

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