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| Sasaki, Y., Thompson, P., McNaught, J. und Ananiadou, S., Biological Event Recognition with Textual Induction, in: Proceedings of 3rd International Symposium on Languages in Biology and Medicine (LBM-2009), Seiten 91--96, 2009
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| Venturi, G., Montemagni, S., Marchi, S., Sasaki, Y., Thompson, P., McNaught, J. und Ananiadou, S., Bootstrapping a Verb Lexicon for Biomedical Information Extraction, in: Proceedings of the 10th International Conference on Intelligent Text Processing and Computational Linguistics (CICLing 2009), Seiten 137--148, Springer, 2009
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| Matsuoka, Y., Ghosh, S., Kikuchi, N., Sætre, R., Kemper, B., Okazaki, N., Ananiadou, S., Tsujii, J. und Kitano, H., Community Platform for Pathway Model Building, in: 10th International Conference on Systems Biology, Seiten 139-140, Stanford University, 2009
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| Tekiner, F., Ananiadou, S., Tsuruoka, Y. und Tsujii, J., Highly Scalable Text Mining Parallel Tagging Application, in: Proceedings of ICSSCW2009, Famgusta, Cyprus, 2009
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| Piao, S., Rea, B., McNaught, J. und Ananiadou, S., Improving Full Text Search With Text Mining Tools, in: Proceedings of the 14th International Conference on Applications of Natural Language to Information Systems, Seiten 301-302, 2009
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| Kano, Y., McCrochon, L., Ananiadou, S. und Tsujii, J., Integrated NLP Evaluation System for Pluggable Evaluation Metrics with Extensive Interoperable Toolkit, in: Proceedings of the NAACL HLT Workshop on Software Engineering, Testing, and Quality Assurance for Natural Language Processing, Seiten 22--30, 2009
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| Nobata, C., Sasaki, Y., Okazaki, N., Rupp, C. J., Tsujii, J. und Ananiadou, S., Semantic Search on Digital Document Repositories based on Text Mining Results, in: International Conferences on Digital Libraries and the Semantic Web 2009 (ICSD2009), Seiten 34--48, 2009
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| Ananiadou, S., Weissenbacher, D., Rea, B., Pieri, E., Lin, Y., Vis, F., Procter, R. und Halfpenny, P., Supporting Frame Analysis using Text Mining, in: Proceedings of the 5th International Conference on e-Social Science, 2009
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| Sasaki, Y., Thompson, P., McNaught, J. und Ananiadou, S., Three BioNLP Tools Powered by the BioLexicon, in: Proceeedings of EACL 2009 Demonstration Session, Seiten 61--64, 2009
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| Okazaki, N., Tsuruoka, Y., Ananiadou, S. und Tsujii, J., A Discriminative Candidate Generator for String Transformations, in: Proceedings of the 2008 Conference on Empirical Methods in Natural Language Processing (EMNLP 2008), Seiten 447-456, 2008
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| Sasaki, Y., Montemagni, S., Pezik, P., Rebholz-Schuhmann, D., McNaught, J. und Ananiadou, S., BioLexicon: A Lexical Resource for the Biology Domain, in: Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008), Turku, Finland, Seiten 109--116, Turku Centre for Computer Science (TUCS), 2008
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| Rebholz-Schuhmann, D., Pezik, P., Lee, V., Kim, J-J., del Gratta, R., Sasaki, Y., McNaught, J., Montemagni, S., Monachini, M., Calzolari, N. und Ananiadou, S., BioLexicon: Towards a Reference Terminological Resource in the Biomedical Domain, in: Proceedings of the of the 16th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB-2008), 2008
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| Thompson, P., Cotter, P., McNaught, J., Ananiadou, S., Montemagni, S., Trabucco, A. und Venturi, G., Building a Bio-Event Annotated Corpus for the Acquisition of Semantic Frames from Biomedical Corpora, in: Proceedings of the Sixth International Conference on Language Resources and Evaluation (LREC 2008), Seiten 2159--2166, European Language Resources Association (ELRA), 2008
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| Thompson, P., Venturi, G., McNaught, J., Montemagni, S. und Ananiadou, S., Categorising Modality in Biomedical Texts, in: Proceedings of the LREC 2008 Workshop on Building and Evaluating Resources for Biomedical Text Mining., Seiten 27--34, 2008
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| Splendiani, A., Piao, S., Sasaki, Y., Ananiadou, S., McNaught, J. und Burgun, A, Compositional Enrichment of Bio-Ontologies, in: Proceedings of 11th Annual Bio-Ontologies Meeting, at the Intelligent Systems for Molecular Biology 2008 Conference (ISMB-2008), 2008
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| Sætre, R., Kemper, B., Oda, K., Okazaki, N., Matsuoka, Y., Kikuchi, N., Kitano, H., Tsuruoka, Y., Ananiadou, S. und Tsujii, J., Connecting Text Mining and Pathways using the PathText Resource, in: Proceedings of the Sixth International Conference on Language Resources and Evaluation (LREC 2008), Seiten 1736-1740, European Language Resources Association (ELRA), 2008
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| Sasaki, Y., Thompson, P., Cotter, P., McNaught, J. und Ananiadou, S., Event Frame Extraction Based on a Gene Regulation Corpus, in: Proceedings of the 22nd International Conference on Computational Linguistics (Coling 2008), Seiten 761--768, Coling 2008 Organizing Committee, 2008
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| Kano, Y., Nguyen, N. T. H., Sætre, R., Yoshida, K., Miyao, Y., Tsuruoka, Y., Matsubayashi, Y., Ananiadou, S. und Tsujii, J., Filling the gaps between tools and users: a tool comparator, using protein-protein interaction as an example., in: Proceedings of the Pacific Symposium on Biocomputing 2008 (PSB 2008), Seiten 616--627, 2008
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| Sasaki, Y., Tsuruoka, Y., McNaught, J. und Ananiadou, S., How to Make the Most of NE Dictionaries in Statistical NER, in: Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing (BioNLP 2008), Seiten 63--70, Association for Computational Linguistics, 2008
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