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Publications of Tsujii, J. sorted by journal and type
Transactions on Computational Biology and Bioinformatics (TCBB), BioCreative II.5 Special Issue
| , , , , and , Extracting Protein-Interactions from Text with the Unified AkaneRE Event Extraction System (2010), in: Transactions on Computational Biology and Bioinformatics (TCBB), BioCreative II.5 Special Issue, 7:3(442-453) |
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Trends in Biotechnology
| , , and , Event extraction for systems biology by text mining the literature (2010), in: Trends in Biotechnology, 28:7(381-390) |
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| , and , Text mining and its potential applications in systems biology (2006), in: Trends in Biotechnology, 24:12(571 - 579) |
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Publications of type Inbook
2021
| , , , , , and , Next Big Challenges in Core AI Technology, pages 90-115, Springer, 2021 |
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Publications of type Incollection
2017
| , and , The GENIA Corpus: Annotation Levels and Applications, in: Handbook of Linguistic Annotation, pages 1395-1432, Springer, 2017 |
[DOI] [URL] |
2010
| , and , Probabilistic Context-Free Grammars with Latent Annotations, in: Supertagging - Using Complex Lexical Descriptions in Natural Language Processing, pages 337--354, MIT Press, 2010 |
2006
| and , Corpora and their Annotation, in: Text Mining for Biology and Biomedicine, Artech House, 2006 |
2005
| , and , A Persistent Feature-Object Database for Intelligent Text Archive Systems, in: Natural Language Processing - IJCNLP 2004, pages 197--205, Springer-Verlag, 2005 |
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| , and , Adapting a probabilistic disambiguation model of an HPSG parser to a new domain, in: Natural Language Processing – IJCNLP 2005, pages 199--210, Springer-Verlag, 2005 |
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| and , Assigning Polarity Scores to Reviews Using Machine Learning Techniques, in: Natural Language Processing - IJCNLP 2005, Springer-Verlag, 2005 |
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| , , , , , and , Developing a Robust Part-of-Speech Tagger for Biomedical Text, in: Advances in Informatics - 10th Panhellenic Conference on Informatics, pages 382--392, Springer-Verlag, 2005 |
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| and , Iterative CKY Parsing for Probabilistic Context-Free Grammars, in: Natural Language Processing - IJCNLP 2004, pages 52-60, Springer-Verlag, 2005 |
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| , and , Mining Biomedical Abstracts: What’s in a Term?, in: Natural Language Processing – IJCNLP 2004, Springer-Verlag, 2005 |
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Publications of type Inproceedings
In Press
| , , , , , , , , and , ELAINE-medLLM: Lightweight English Japanese Chinese Trilingual Large Language Model for Bio-medical Domain, in: Proceedings of the 31st International Conference on Computational Linguistics (COLING 2025), In Press |
2020
| , , , , and , CharacterBERT: Reconciling ELMo and BERT for Word-Level Open-Vocabulary Representations From Characters, in: Proceedings of the 28th International Conference on Computational Linguistics (COLING 2020), pages 6903–6915, 2020 |
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| and , Compositional Phrase Alignment and Beyond, in: Proceedings of EMNLP 2020, pages 1611–1623, 2020 |
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2018
| , and , Improve Chinese Clinical Named Entity Recognition Performance by Using the Graphical and Phonetic Feature, in: Proceedings of the 2018 International Workshop on Biomedical and Health Informatics, 2018 |
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2017
| , , , , , and , Distributed Document and Phrase Co-embeddings for Descriptive Clustering, in: Proceedings of EACL, pages 991-1001, 2017 |
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| and , Monolingual Phrase Alignment on Parse Forests, in: Proceedings of the 2017 Conference on Empirical Methods in Natural Language Processing, pages 1-11, 2017 |
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2014
| , , and , Combining String and Context Similarity for Bilingual Term Alignment from Comparable Corpora, in: Proceedings of the 2014 Conference on Empirical Methods in Natural Language Processing (EMNLP), Doha, Qatar, pages 1701-1712, Association for Computational Linguistics, 2014 |
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| , , and , Using a Random Forest Classifier to Compile Bilingual Dictionaries of Technical Terms from Comparable Corpora, in: Proceedings of the 14th Conference of the European Chapter of the Association for Computational Linguistics, volume 2: Short Papers, Association for Computational Linguistics, Gothenburg, Sweden, pages 111-116, Association for Computational Linguistics, 2014 |
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2013
| , , and , Using Random Forest to recognise translation equivalents of biomedical terms across languages, in: Proceedings of the Sixth Workshop on Building and Using Comparable Corpora, Sofia, Bulgaria, pages 95-104, Association for Computational Linguistics, 2013 |
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2012
| , , , , and , brat: a Web-based Tool for NLP-Assisted Text Annotation, in: Proceedings of the Demonstrations at the 13th Conference of the European Chapter of the Association for Computational Linguistics, Avignon, France, pages 102-107, Association for Computational Linguistics, 2012 |
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| , , , and , Bridging the Gap Between Scope-based and Event-based Negation/Speculation Annotations: A Bridge Not Too Far, in: Proceedings of ExProM 2012, pages 47-56, 2012 |
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| , , and , Open-domain Anatomical Entity Mention Detection, in: Proceedings of the ACL Workshop on Detecting Stucture in Scholarly Discourse (DSSD), pages 27-36, 2012 |
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