Seminar — Martin Krallinger
Speaker: | Martin Krallinger, Centro Nacional de Investigaciones Oncológicas, Madrid. |
Title: | The second BioCreative Protein Interaction task: evaluating the automatic Extraction of Protein Interactions from the Literature |
Date: | |
Location: | |
Abstract: | To provide useful tools that assist biologists in extracting biological annotations from the literature, several aspects are of importance. A crucial point here is the detection of articles relevant for a given annotation type. In case of protein interactions, the subsequent correct identification and association of mentioned interactor proteins to their corresponding database entries (e.g. SwissProt records) is crucial. Here, not only the individual interactors but also the correct binary interaction pair needs to be extracted. Biological annotations of protein interactions are associated to qualitative information in the sense of the interaction detection experiments, which have been carried out to characterize a given interaction. Finally, for human interpretation, textual passages, which summarize the mentioned interaction, are relevant for efficient curation. All these aspects have been addressed in the Protein-Protein Interaction (PPI) task of the Second BioCreative challenge evaluation. |
Featured News
- FinNLP-FNP-LLMFinLegal @ COLING-2025 - Call for papers
- Keynote talk at Manchester Law and Technology Conference
- Keynote talk at ACM Summer School on Data Science, Athens
- Congratulations to PhD student Panagiotis Georgiades
Other News & Events
- Invited talk at the 8th Annual Women in Data Science Event at the American University of Beirut
- Invited talk at the 2nd Symposium on NLP for Social Good (NSG), University of Liverpool
- Invited talk at Annual Meeting of the Danish Society of Occupational and Environmental Medicine
- Advances in Data Science and Artificial Intelligence Conference 2024
- New review article on emotion detection for misinformation