BOOTStrep REST Web Service


Important notices:
  • Please provide with a subscription ID when you use this service.
  • For a trail purpose, plese use subscription ID "guest". You need to obtain a subscription ID for 100 hits/day or more.
    Item Description
    Web Service GroupBOOTSTrepWP03Toolkit
    Web Service NameUoM NER Tool v2.0.1
    Web Service URIhttp://www.nactem.man.ac.uk/nemine/nemine.cgi
    AuthorDr. Yutaka Sasaki, PhD, University of Manchester
    FunctionRecognize gene/protein names in text
    Usage http://www.nactem.ac.uk/nemine/nemine.cgi with POSTDATA (upto 40KB)
    In

    Input = a sentence (or sentences with no line breaks)
    SubscriptionID = "guest" for trail use (less than 100 hits/day). You need to obtain a subscription ID for more intensive use.

    Out

    Output = List of <NE begin=START_POSITION end=END_POSITION ne=GENE/PROTEIN_NAME type=NE_TYPE prob=PROBABILITY/>

    Example Given a sentence, "Mutations in IkappaB kinase gamma (IKKgamma) are associated with hypohidrotic ectodermal dysplasia-immune deficiency.", NE outputs will be 
    <NE start="13" end="33" ne="IkappaB kinase gamma" type="PROTEIN" prob="1.0000"/>
    
<NE start="35" end="43" ne="IKKgamma" type="PROTEIN" prob="0.8199"/>
    Demonstration
    Input

    SubscriptionID:

    sample client code in Perl nemine_client.pl (alpha version)
    WSDL (2.0) nemine.wsdl (alpha version)

    Last updated: 23 January 2008
    by Y. Sasaki, Text Mining Group, School of Computer Science, University of Manchester