Workshop Programme

Time Presentation
09:00-09:10 Welcome Remarks - Dina Demner-Fushman
09:10-10:30 Session 1 - Chair: Makoto Miwa
09:10-09:30 Cancer Hallmark Text Classification Using Convolutional Neural Networks
Simon Baker, Anna Korhonen and Sampo Pyysalo
Paper Presentation
09:30-09:50 Learning Orthographic Features in Bi-directional LSTM for Biomedical Named Entity Recognition
Nut Limsopatham and Nigel Collier
Paper Presentation
09:50-10:00 Building Content-driven Entity Networks for Scarce Scientific Literature using Content Information
Reinald Kim Amplayo and Min Song
Paper Presentation
10:10-10:20 Named Entity Recognition in Swedish Health Records with Character-Based Deep Bidirectional LSTMs
Simon Almgren, Sean Pavlov and Olof Mogren
Paper Presentation
10:20-10:30 Entity-Supported Summarization of Biomedical Abstracts
Frederik Schulze and Mariana Neves
Paper Presentation
10:30-10:50 Coffee Break and Poster Session 1
10:50-12:00 Session 2 - Chair: Dina Demner-Fushman
10:50-11:10 Fully unsupervised low-dimensional representation of adverse drug reaction events through distributional semantics
Alicia Pérez, Arantza Casillas and Koldo Gojenola
Paper Presentation
11:10-12:00 KEYNOTE TALK: Learning for Information Extraction in Biomedical and General Domains
Dr Makoto Miwa, Toyota Technological Institute, Japan
12:00-14:00 Lunch break
14:00-15:20 Session 3 - Chair: Mariana Neves
14:00-14:20 A Dataset for ICD-10 Coding of Death Certificates: Creation and Usage
Thomas Lavergne, Aurelie Neveol, Aude Robert, Cyril Grouin, Grégoire Rey and Pierre Zweigenbaum
Paper Presentation
14:20-14:40 A Corpus of Tables in Full-Text Biomedical Research Publications
Tatyana Shmanina, Ingrid Zukerman, Ai Lee Cheam, Thomas Bochynek and Lawrence Cavedon
Paper Presentation
14:40-14:50 Supervised classification of end-of-lines in clinical text with no manual annotation
Pierre Zweigenbaum, Cyril Grouin and Thomas Lavergne
Paper Presentation
14:50-15:00 BioDCA Identifier: A System for Automatic Identification of Discourse Connective and Arguments from Biomedical Text
Sindhuja Gopalan and Sobha Lalitha Devi
15:00-15:10 Data, tools and resources for mining social media drug chatter
Abeed Sarker and Graciela Gonzalez
Paper Presentation
15:10-15:20 Detection of Text Reuse in French Medical Corpora
Eva D'hondt, Cyril Grouin, Aurelie Neveol, Efstathios Stamatatos and Pierre Zweigenbaum
Paper Presentation
15:20-15:50 Coffee Break and Poster Session 2
15:50-17:00 Session 4 - Chair: Pierre Zweigenbaum
15:50-16:10 Negation Detection in Clinical Reports Written in German
Viviana Cotik, Roland Roller, Feiyu Xu, Hans Uszkoreit, Klemens Budde and Danilo Schmidt
Paper Presentation
16:10-16:30 Scoring Disease-Medication Associations using Advanced NLP, Machine Learning, and Multiple Content Sources
Bharath Dandala, Murthy Devarakonda, Mihaela Bornea and Christopher Nielson
Paper Presentation
16:30-16:50 Author Name Disambiguation in MEDLINE Based on Journal Descriptors and Semantic Types
Dina Vishnyakova, Raul Rodriguez-Esteban, Khan Ozol and Fabio Rinaldi
Paper Presentation
16:50-17:00 Closing remarks